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genesFromRandomPathways()
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Function to randomly select genes associated with randomly pathways. |
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getGenes()
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List genes involved in present GPS for a specific pathway in the
summary_results |
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getURL()
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Highlight the relevant genes for a specific pathway in its pathway diagram |
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idmap
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Identifier mappings for protein coding genes. |
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kegH
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Pathway GPS data, extracted from KEGG repository (Human). |
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kegM
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Pathway GPS data, extracted from KEGG repository (Mouse). |
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load_data()
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load and return data when lazyLoad false insted of using data(datastr) |
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makeGPS()
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Create your own Signature Object. |
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nciTable
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NCI human gene-pathway associations. |
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ora()
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Traditional Overrepresentation Analysis. |
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reaH
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Pathway GPS data, extracted from the Reactome repository (Human). |
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reaM
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Pathway GPS data, extracted from Reactome repository (Mouse). |
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sigora()
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Sigora's main function. |